ADL: Question about Ligand

Shabnam N shabnamn2001 at yahoo.com
Sun May 17 15:48:58 PDT 2020


Hello,
I intended to dock "Azithromycin" molecule as a ligand with an enzyme.
When I open input pdb file of the ligand (Azithromycin), I receive an error message as below:

"Azithromycin: :UNK1:H49 and Azithromycin: :UNK1:H49 have the same coordinates"

Please help me to solve this error.
Can I delete H49 (hydrogen number 49) in Azithromycin pdb file, or not? If I can delete H49, please mention a valid reference article for citation.
Thanks
Sincerely,
Shabnam N.




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