ADL: Where to find a protein when it’s not in the PDB?

HOUSTON Douglas DouglasR.Houston at ed.ac.uk
Fri Sep 11 05:07:33 PDT 2020


In fact, you can BLAST search the PDB directly:

https://www.rcsb.org/search/advanced


________________________________
From: autodock-bounces at scripps.edu <autodock-bounces at scripps.edu> on behalf of Rick Sheridan <ricksher at gmail.com>
Sent: 11 September 2020 12:51
To: autodock at scripps.edu <autodock at scripps.edu>
Subject: Re: ADL: Where to find a protein when it’s not in the PDB?

Thanks - (and typo correction-> OATP1A2 )

On Thu, 10 Sep 2020 at 11:53 PM, bushra TAJ <bushraistaj at gmail.com> wrote:

> Hello dear
> In that case you will take its primary sequence and blast to find the
> closest possible match
> in case that closest match is in the PDB repository you can proceed to
> homology modeling
> than you are all good to go
> Best of luck
>
> On Thu, Sep 10, 2020 at 11:50 PM Rick Sheridan <ricksher at gmail.com> wrote:
>
> > Hi folks -  does anyone know where can be found a pdb for OATPA12
> > (associated gene SLCO1A2)?
> >
> > The PDB doesn’t have it:
> >
> >
> >
> http://www.rcsb.org/pdb/protein/P46721?chromosome=chr12&range=21428294&v=hg37
> >
> > Best,
> > Rick
> > --
> > --
> > ********************************************************************
> > Rick Sheridan
> > EMSKE Phytochem
> > Head of R&D
> > Whatsapp:  +1-551-285-8136
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Rick Sheridan
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Head of R&D
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