ADL: Where to find a protein when it’s not in the PDB?

Rick Sheridan ricksher at gmail.com
Fri Sep 11 11:14:36 PDT 2020


Ah understood, many thanks all! =)

On Fri, 11 Sep 2020 at 3:52 PM, HOUSTON Douglas <DouglasR.Houston at ed.ac.uk>
wrote:

> In fact, you can BLAST search the PDB directly:
>
> https://www.rcsb.org/search/advanced
>
>
> ________________________________
> From: autodock-bounces at scripps.edu <autodock-bounces at scripps.edu> on
> behalf of Rick Sheridan <ricksher at gmail.com>
> Sent: 11 September 2020 12:51
> To: autodock at scripps.edu <autodock at scripps.edu>
> Subject: Re: ADL: Where to find a protein when it’s not in the PDB?
>
> Thanks - (and typo correction-> OATP1A2 )
>
> On Thu, 10 Sep 2020 at 11:53 PM, bushra TAJ <bushraistaj at gmail.com> wrote:
>
> > Hello dear
> > In that case you will take its primary sequence and blast to find the
> > closest possible match
> > in case that closest match is in the PDB repository you can proceed to
> > homology modeling
> > than you are all good to go
> > Best of luck
> >
> > On Thu, Sep 10, 2020 at 11:50 PM Rick Sheridan <ricksher at gmail.com>
> wrote:
> >
> > > Hi folks -  does anyone know where can be found a pdb for OATPA12
> > > (associated gene SLCO1A2)?
> > >
> > > The PDB doesn’t have it:
> > >
> > >
> > >
> >
> http://www.rcsb.org/pdb/protein/P46721?chromosome=chr12&range=21428294&v=hg37
> > >
> > > Best,
> > > Rick
> > > --
> > > --
> > > ********************************************************************
> > > Rick Sheridan
> > > EMSKE Phytochem
> > > Head of R&D
> > > Whatsapp:  +1-551-285-8136
> > > www.linkedin.com/in/ricksheridan<
> http://www.linkedin.com/in/ricksheridan>
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> Rick Sheridan
> EMSKE Phytochem
> Head of R&D
> Whatsapp:  +1-551-285-8136
> www.linkedin.com/in/ricksheridan<http://www.linkedin.com/in/ricksheridan>
> <http://www.linkedin.com/pub/rick-sheridan/9/654/515>
> Skype:ricksher16
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********************************************************************
Rick Sheridan
EMSKE Phytochem
Head of R&D
Whatsapp:  +1-551-285-8136
www.linkedin.com/in/ricksheridan
<http://www.linkedin.com/pub/rick-sheridan/9/654/515>
Skype:ricksher16
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